From: 新知&创行
最近和许多都正在web2.0大潮创业的哥们交流，看见了很多形形色色的团队，如果你是作为创业者和团队的领导者，是否都在想你的团队是怎么样、需要有什么样的团队才可以成功呢？我倒看见一些这样的团队：
ZT: Web2.0创业：需要什么样的团队
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Tag Archives: Family
A picture of my grandparents
My sister posts a few nice pictures of her childhood and the family in her blog. The first one is the wedding picture of my grandparents.
They say “time flies”…
ZT: 人才与武汉
作者：王方（深圳） 来源：经济学消息报 发表日期: 2004-10-10
武汉是华中最为重要的政治、经济、文化中心，同时又是九省通衢。过去的历史让武汉人感到骄傲和难以忘怀，甚至是陶醉。然而，在面对创造历史的“人才”面前，武汉的现实令人忧虑。
Change shell
According LSB’s documents, this is the way to change SHELL.
On Solaris : passwd -r nis –e
On Linux : ypchsh wf002xx
(csh – /bin/csh ksh – /bin/ksh sh -
/bin/sh)
Important – Please enter only the path to the
configured shells or you will not able to login anymore after the change.
Total webmail with Gmail
One step to live without a laptop is to use webmail as more as
possbile, so I am moving my 900MB mail achives from local disk, now
nevertheless not so reliable, to google’s gmail, which provides a
nearly unlimited space (2GB). The migration is a little tedious.
C version, 150 times faster !
I used to use perl to implement to algorithm that alan and I are
working with. The performance is OK as for 5300 scaffolds it takes
70-80 minutes to complete the full comparison. I would not have thought
of re-write it in C if Leon did not ask me for a performance senimar in
the near future.
For
this seminar, I would like to have a real-case CPU-intensive program to
work with SHARK tool, and this gene duplication tool would be perfect
for it. It took me two days to re-write it in C (isnt's it amazing that
I have not touch C for almost 3 years).
Design first pipeline protocol
This protocol is used for phylip tree, obtained from biopipe website.
Given files containing family of proteins run it through the following pipeline:
- Proteins
- Clustalw or TCoffee
- SeqBoot
- ProtDist
- Neighbor
- Consense
- DrawTree
Sample Result of My Algorithm
Just fun to save a sample. It looks good to me.
------------------------------------------------------------------ Final ResultSCAFFOLD_1009 : bkmf**le* ==== === SCAFFOLD_381 : *od*ig*hl*fcnji*a LABLE '*' : family unknownLABEL 'a' : family ID=1405LABEL 'b' : family ID=5571LABEL 'c' : family ID=1406LABEL 'd' : family ID=3831LABEL 'e' : family ID=5627LABEL 'f' : family ID=4632LABEL 'g' : family ID=3287LABEL 'h' : family ID=5710LABEL 'i' : family ID=4567LABEL 'j' : family ID=881LABEL 'k' : family ID=1917LABEL 'l' : family ID=23LABEL 'm' : family ID=140LABEL 'n' : family ID=3553LABEL 'o' : family ID=581 ------------------------------------------------------------------ Final ResultSCAFFOLD_1009 : ahle**id* ==== == SCAFFOLD_40 : jg*ei*kfcb LABLE '*' : family unknownLABEL 'a' : family ID=5571LABEL 'b' : family ID=4622LABEL 'c' : family ID=4633LABEL 'd' : family ID=5627LABEL 'e' : family ID=4632LABEL 'f' : family ID=4003LABEL 'g' : family ID=2716LABEL 'h' : family ID=1917LABEL 'i' : family ID=23LABEL 'j' : family ID=4634LABEL 'k' : family ID=4624LABEL 'l' : family ID=140 ------------------------------------------------------------------ Final ResultSCAFFOLD_1012 : c*bd*a* === === SCAFFOLD_2455 : *adde* LABLE '*' : family unknownLABEL 'a' : family ID=4336LABEL 'b' : family ID=23LABEL 'c' : family ID=3233LABEL 'd' : family ID=3457LABEL 'e' : family ID=137 ------------------------------------------------------------------ Final ResultSCAFFOLD_10161 : cb == ===SCAFFOLD_7699 : cab LABLE '*' : family unknownLABEL 'a' : family ID=2976LABEL 'b' : family ID=3569LABEL 'c' : family ID=3750
Algorithm design
Alan assigned a algorithm design task to me. The algorithm is used
to detect gene duplication between two different sequences. The
matching criteria are:
- At least two pairs of genes are from same family
- We allow a configurable amount of mismatch in between any two consecutive matching genes
- The distance between any two matching genes must be limited
Create a TAR
TAR 3794450.996