I once helped machine to install mysql4 on her own linux box. It is on /usr/local/ensembl/mysql4. To start this instance, login to marbore as my id, change folder to /usr/local/ensembl/mysql4 and do “bin/mysqld_safe –no-defaults &”. To access the local mysql server, do a “/usr/local/ensembl/mysql4/bin/mysql -u root”.
Marie asked me to help her install ensembl v31 on her local machine
as the support team is relunctant to install it on the server.
This is the new version of scripts that I used to download ensembl
mysql data v31 and import data into mysql server. This version works
with gzipped format.
This is to be used by SRS 8.1.1. Six species need to be loaded. I modified a script from net to make it work automatically.
I finally decide to allocate some time to this backlogged project.
Installed and distributed two perl modules for ensembl21 PDF::API2 and MATH:BEZIER.
The entire ensembl17 mysql data has been moved from mysql host to mysql-dev host. 120GB data are transferred. Downtime is minimized to 5 minutes.
Allison has kindly formated blast data for Ensembl 21 data, it is 47GB and the distribution starts today from 9:15AM.
We found mysql server is extremely slow these days and finally figured out it has been 100% full.
Srinivas asked for file distribution.