协王瑜就医记－［精装古文版］
瑜手肿。
医曰："拍片！"
瑜惧而泣。
鹏曰："庸医也！"
怒去，遂投名医。
名医曰："无碍！"
拔针扎之，肿消瑜笑。
购物庆祝，逾百而极乐。
协王瑜就医记
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Monthly Archives: December 2004
Dev Log 2004-12-18
"Biotools" function
- Email notification implemented
- Implemented tool configuration page caching (support two configLevel). (Check XML file modified time with current time)
- Implemented tool list page caching. (categoryList and NameList).
Dev Log 2004-12-17
"Biotools" function
- Job STDOUT and STDERR are directed to a local temp file. After execution, the STDXXX is appended to my tmpFolder for review
Boot Powerbook into a external firewire dirve
During boot up period, press "T" and your Mac becomes a external disk (without loading system). Amazing…
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Dev Log 2004-12-16
"Biotools" function
- Processing of Excl type is differenitated with number of values (a
drop down list when items >3, otherwise radio button). <== PISE Way - For delayed execution job, if user click on Run and refresh, the
page will be directed to the result page. (run script will check job
status to prevent duplicated execution) - Now can show input data for submitted job (new field in job table)
- Fixed a bug of getHash in biotools.cmd.php when cmdFull is simplified.
- Some layout change in tool configuration page header
- Add email input box in tool configuration page. The email address is automatically loaded with user registered email address
- Email validation javascript in configuration page
- New script class to generate running script for jobs. This is the super class for all kinds of jobs (local, LSF etc)
- Code is cleaned in biotools.job.php file for the new script class
Dev Log 2004-12-15
"Biotools" function
- results of previous job can be passed into next job, the
configuration page can show piped/non-piped parameters correctly (Great
XSLT hack) - Piped job results can be reserved with switching param format (simple/adv)
- My Godness..hahaha…. piped job can run …. hahaha… too happy
- A great milestone. web-GUI program can be piped and RUN… hahah
- Now I have implement the main functions of PISE.
- Improved support for OutFile tag where (*.zzz *.yyy) format is supported
- File upload is improved. Add "chdir" to script so that we do not need to put the full name in the script.
Using CPAN
I am installing a perl 5.8.6 for cluster as TFBS does not work with old 5.6.0. Using CPAN in cluster perl module installation has some problems as FTP all hangs during download.
Solution: on that machine, do a export FTP_PASSIVE=1, and LWP::FTP goes well.
Dev Log 2004-12-14
"Biotools" function
- Remove withPipeParams field in pipeables table
- withPipeParam moved to result table, seesm to be working
Dev Log 2004-12-12/13
"Biottols" function
- "OutFile" tag is correctly process and saved to cp_biotools_job_results table.
- The best why to save installed XML is NOT in DB but as FILE, as we need to implement XML authentication, which is based on file.
Dev Log 2004-12-11
"Biotools" function
- paramfile tag in XML file is processed
- Fixed a bug in getting result files where precondition is not used
- Fixed a problem in PHYLIP-3.63, where fontfile is not correctly process. Now drawtree and drawfile work well
- At the status page, click on app name can start a new job with that app